Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK81822.1Lipopolysaccharide biosynthesis protein. (511 aa)    
Predicted Functional Partners:
capF
CapF: capsular polysaccharide synthesis enzyme.
  
  
 0.820
CCK81686.1
dTDP-glucose 4,6-hedydratase.
  
  
 0.761
rfbD
RfbD: UDP-galactopyranose mutase.
  
  
 0.754
CCK81830.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.692
CCK81820.1
Predicted acyltransferase 3.
  
  
 0.682
CCK81821.1
Uncharacterized protein.
       0.668
hisHF
HisHF: imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF; Belongs to the HisA/HisF family.
  
    0.658
CCK80493.1
UDP-glucose dehydrogenase domain protein.
  
  
 0.631
algD
AlgD: GDP-mannose 6-dehydrogenase.
  
  
 0.631
wecB
WecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.618
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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