Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcBConserved uncharacterized protein, UPF0027; Belongs to the RtcB family. (477 aa)    
Predicted Functional Partners:
CCK81867.1
Conserved uncharacterized protein, DUF101.
 
 0.993
rhlB
RhlB: ATP-dependent RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
   
 0.518
rhlE
RhlE: predicted ATP-dependent RNA helicase.
   
 0.518
rhlE2
RhlE2: predicted ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.518
dbpA
DbpA: ATP-independent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.518
deaD
DeaD: cold-shock DEAD box protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
 0.518
CCK82449.1
Predicted ATP-dependent RNA helicase.
   
 0.518
CCK82503.1
2?-5?RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
   
 0.484
fadD
FadD: long-chain-fatty-acid--CoA ligase.
  
   0.470
CCK82159.1
Predicted peptide chain release factor 2, related to PrfB; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
  
 0.465
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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