Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK81899.1Conserved uncharacterized protein; Signal peptide. (433 aa)    
Predicted Functional Partners:
skp
Skp: predicted outer membrane chaperone; Signal peptide.
    
 
 0.810
CCK81898.1
Predicted molybdenum ABC transporter, periplasmic molybdate-binding protein; Signal peptide.
     
 0.685
CCK78494.1
Putative outer membrane lipoprotein; Signal peptide.
  
  
 0.637
CCK78894.1
Uncharacterized protein.
    
 
 0.601
secA
SecA: protein translocase, subunit A; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.601
yaeT
YaeT: outer membrane protein assembly complex protein.
 
 
 
 0.557
bamD
Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.531
CCK79097.1
CMP/dCMP deaminase zinc-binding; Signal peptide.
  
     0.511
CCK81051.1
Serine protease, related to trypsin; Signal peptide.
    
 
 0.507
degP
DegP: serine protease, do-like; Belongs to the peptidase S1C family.
    
 
 0.507
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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