Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccaCca: predicted CCA-adding enzyme (tRNA nucleotidyltransferase); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (438 aa)    
Predicted Functional Partners:
pnp
Pnp: polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
 
 0.843
birA2
BirA2: biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.777
folK
FolK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.
  
  
 0.759
dapB
DapB: dihydrodipicolinate reductase; Belongs to the DapB family.
  
  
 0.752
glmM
GlmM: phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
    
 0.694
flgF
FlgF: flagellar basal-body rod protein.
   
   0.664
CCK81916.1
Major facilitator superfamily MFS1 protein.
       0.634
rnc
Rnc: ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
  
 0.612
ftsW
FtsW: cell division protein FtsW; Belongs to the SEDS family.
 
     0.608
penA
PenA: penicillin-binding protein 2.
 
   
 0.601
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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