Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK82025.1Transcriptional regulator, MarR family. (150 aa)    
Predicted Functional Partners:
CCK78291.1
Transcriptional regulator, MarR family.
  
     0.577
CCK81789.1
Predicted polyketide synthase.
  
  
 0.562
CCK81829.1
Amino acid adenylation domain protein.
  
  
 0.447
CCK78888.1
Radical SAM domain protein.
 
     0.433
CCK82024.1
TRAP transporter, 4TM/12TM fusion protein.
       0.427
CCK78367.1
Putative transcriptional regulator, AraC type; Contains ThiJ/PfpI domain.
  
  
 0.425
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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