Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK82247.1Radical SAM domain protein, related to lysine 2,3-aminomutase. (796 aa)    
Predicted Functional Partners:
CCK80481.1
Pyridoxal-dependent decarboxylase, exosortase system type1 associated.
     
 0.805
lysA3
LysA3: diaminopimelate decarboxylase.
     
 0.805
CCK82246.1
Conserved uncharacterized protein; Belongs to the LOG family.
       0.773
trmB-2
TrmB: predicted sugar-specific transcriptional regulator.
  
     0.486
CCK82243.1
Conserved uncharacterized protein; Signal peptide.
 
     0.475
CCK79139.1
MCP methyltransferase/methylesterase, CheR/CheB-like with PAS/PAC sensor domain.
   
   0.472
CCK82244.1
Conserved uncharacterized protein; Signal peptide.
  
    0.449
CCK82245.1
Two component system sensor histidine kinase, hybrid.
       0.446
poxA
PoxA: putative lysyl-tRNA synthetase (lysine--tRNA ligase).
 
  
 0.432
cheR
CheR: chemotaxis protein methyltransferase.
    
   0.429
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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