Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK82340.1Transcriptional regulator, AraC family. (335 aa)    
Predicted Functional Partners:
CCK82341.1
TonB-dependent receptor; Signal peptide.
 
   
 0.761
rpoA
RpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.681
CCK82342.1
O-methyltransferase, family II.
 
     0.654
CCK78220.1
TonB-dependent receptor.
  
   
 0.648
CCK81464.1
TonB-dependent receptor, fragment.
  
   
 0.647
CCK81467.1
TonB-dependent receptor, related to iron transport; Signal peptide.
  
   
 0.644
CCK81454.1
TonB-dependent receptor, related to iron transport.
  
   
 0.632
CCK81468.1
TonB-dependent receptor, related to iron transport.
  
   
 0.612
CCK79085.1
Predicted TonB-dependent receptor.
  
   
 0.604
CCK81460.1
TonB-dependent receptor; Signal peptide.
  
   
 0.580
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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