Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK82362.1ABC2-type transporter, permease protein. (245 aa)    
Predicted Functional Partners:
CCK82361.1
ABC transporter, ATP-binding protein, related to Nod factor export.
 
  
 0.972
CCK82521.1
Conserved uncharacterized protein.
  
  
 0.824
CCK82360.1
Magnesium chelatase.
 
     0.762
CCK82363.1
Predicted adenosylcobinamide amidohydrolase.
 
     0.761
CCK82359.1
Magnesium chelatase.
 
     0.697
CCK81422.1
Nitroreductase.
  
  
 0.664
CCK79218.1
Nitroreductase.
  
  
 0.654
CCK81165.1
Predicted NADH dehydrogenase/NAD(P)H nitroreductase.
  
  
 0.654
CCK80295.1
Predicted ABC transporter, ATP-binding protein; Signal peptide.
  
  
 0.652
CCK79385.1
Predicted ABC transporter, ATP-binding protein.
  
  
 0.642
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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