Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK82545.1Cyctchrome c, class III family protein; Signal peptide. (685 aa)    
Predicted Functional Partners:
nrfD3
NrfD3: predicted polysulfide reductase; Signal peptide.
 
     0.937
CCK82543.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
    0.886
CCK79923.1
Cytochrome b561; Signal anchor.
 
   
 0.801
bamH1
BamH1: NADH-quinone oxidoreductase, subunit F.
   
   0.794
bamH3
BamH3: NADH-quinone oxidoreductase, subunit F.
   
   0.794
pfaA
PfaA: polyketide-type polyunsaturated fatty acid synthase.
  
 
 
 0.770
CCK78803.1
Putative protease family S8 and S53 protein.
   
 
 0.758
pqqL
PqqL: predicted zinc protease, M16 family; Belongs to the peptidase M16 family.
    
   0.713
CCK79468.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.610
ppiA
PpiA: peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.610
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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