STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB47594.1Type VI secretion system, VipA, VC_A0107 or Hcp2. (152 aa)    
Predicted Functional Partners:
SKB47784.1
Hypothetical protein.
 
 
 0.986
SKB47715.1
Hypothetical protein.
 
 
 0.975
SKB47650.1
Phage late control gene D protein (GPD).
 
  
 0.972
SKB47704.1
Hypothetical protein.
 
  
 0.955
SKB47602.1
Hypothetical protein.
 
     0.920
SKB47610.1
Hypothetical protein.
 
     0.896
SKB47580.1
ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family.
 
 
 0.895
SKB47671.1
Gene 25-like lysozyme.
 
   
 0.873
SKB47774.1
Hypothetical protein.
 
     0.846
SKB47534.1
Protein phosphatase.
  
 
 0.703
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.