STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB48347.1Iron complex outermembrane recepter protein. (1027 aa)    
Predicted Functional Partners:
SKB48401.1
SusD family protein.
 
     0.949
SKC20724.1
SusD family protein.
 
     0.783
SKC04862.1
SusD family protein.
  
 
   0.724
SKB46976.1
Starch-binding associating with outer membrane.
  
 
   0.689
SKC13626.1
Starch-binding associating with outer membrane.
  
 
   0.666
SKB58203.1
SusD family protein.
  
 
   0.659
SKC15785.1
Starch-binding associating with outer membrane.
  
 
   0.635
SKB60833.1
Starch-binding associating with outer membrane.
  
 
   0.622
SKB99694.1
Starch-binding associating with outer membrane.
 
     0.618
SKB85231.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
0.615
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.