STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49011.1CarboxypepD_reg-like domain-containing protein. (591 aa)    
Predicted Functional Partners:
SKB49026.1
FecR family protein.
 
     0.835
SKB49038.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
   0.826
SKB76775.1
Predicted ATPase.
   
 0.783
SKB48998.1
Hypothetical protein.
 
    
0.647
SKB54158.1
LysM repeat-containing protein.
   
 
 0.605
SKB43695.1
CarboxypepD_reg-like domain-containing protein.
 
     0.602
SKC13349.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.600
SKB56916.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.593
SKB69314.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.563
SKB87468.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.535
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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