STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49328.1ABC-type multidrug transport system, ATPase component. (303 aa)    
Predicted Functional Partners:
SKB49261.1
ABC-2 type transport system permease protein.
 
 0.997
SKB49292.1
ABC-2 type transport system permease protein.
 
 0.997
SKB49342.1
HlyD family secretion protein.
 
    0.956
SKB49352.1
Outer membrane protein TolC.
 
     0.927
SKB77309.1
ABC-2 family transporter protein.
  
 0.888
SKB49362.1
Transcriptional regulator, TetR family.
 
     0.880
SKB43015.1
Cu-processing system permease protein.
  
 0.806
SKC12571.1
ABC-2 type transport system permease protein.
  
 0.806
SKB49308.1
ABC-2 type transport system ATP-binding protein.
 
    
0.787
SKB42975.1
Nitrous oxidase accessory protein.
 0.748
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.