STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB52528.1Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (394 aa)    
Predicted Functional Partners:
SKB44770.1
Adenylyltransferase and sulfurtransferase.
   
 0.954
SKB52533.1
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
    
 0.912
SKB56270.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.903
SKC11284.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.903
SKC20113.1
Ferredoxin-NADP reductase.
  
 0.903
SKC04027.1
Hypothetical protein.
  
 0.887
SKC06475.1
Ferredoxin, 2Fe-2S.
  
 0.887
SKB92227.1
L-selenocysteine selenide-lyase (L-alanine-forming); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
0.875
SKB42517.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.856
SKC10800.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.856
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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