STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB54158.1LysM repeat-containing protein. (346 aa)    
Predicted Functional Partners:
SKB54179.1
Protein of unknown function.
 
     0.835
SKB45304.1
Peptidyl-prolyl cis-trans isomerase SurA.
 
 
 0.811
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.775
SKB69314.1
WD40-like Beta Propeller Repeat.
 
 
 0.770
SKB54134.1
TIGR02757 family protein.
       0.762
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
 0.754
SKB54146.1
Hypothetical protein.
       0.748
SKC06898.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.733
SKB94419.1
Beta-glucosidase.
    
 0.720
SKC14017.1
Beta-glucosidase.
    
 0.720
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.