STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB57625.1Penicillin-binding protein 1A. (852 aa)    
Predicted Functional Partners:
SKC01386.1
Cell division initiation protein.
   
 
 0.952
SKB75474.1
Penicillin-binding protein 2.
 
 
 0.934
SKC10821.1
Cell division protein FtsI (penicillin-binding protein 3).
 
 
 0.917
SKB84421.1
Sporulation related domain-containing protein.
  
 
 0.881
SKB52403.1
LPS export ABC transporter protein LptC.
    
 0.862
SKB75490.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
 
 0.848
SKC16952.1
Penicillin-binding protein 1C.
  
  
 
0.808
SKC09985.1
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 0.789
SKB54433.1
Penicillin-binding protein 1A.
  
  
 
0.783
murG
UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 
 0.759
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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