STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB58235.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)    
Predicted Functional Partners:
SKB58228.1
FecR family protein.
 
   0.866
SKB58418.1
FecR family protein.
 
   0.762
SKB58154.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.739
SKB93279.1
FecR family protein.
  
   0.735
SKB83845.1
FecR family protein.
  
   0.719
SKC16721.1
FecR family protein.
  
   0.710
SKB44609.1
FecR family protein.
  
   0.705
SKB60854.1
FecR family protein.
  
   0.700
SKC04633.1
FecR family protein.
  
   0.691
SKB82158.1
FecR family protein.
  
   0.687
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.