STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mqoMalate dehydrogenase (quinone). (516 aa)    
Predicted Functional Partners:
SKB86511.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.940
SKB46556.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.939
SKB73450.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.935
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.920
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.917
SKC17062.1
Phosphoenolpyruvate carboxylase, type 1; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
     
 0.914
SKC15664.1
Carbon-nitrogen hydrolase.
  
  
  0.912
SKC15003.1
Argininosuccinate lyase.
    
 0.910
SKC11299.1
Aspartate aminotransferase.
   
 
 0.908
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
    
  0.906
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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