Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKB77035.1TonB-linked outer membrane protein, SusC/RagA family. (1069 aa)    
Predicted Functional Partners:
SKB77050.1
Starch-binding associating with outer membrane.
 
 
   0.942
SKB77057.1
IPT/TIG domain-containing protein.
 
     0.897
SKB46976.1
Starch-binding associating with outer membrane.
  
 
   0.785
SKC15785.1
Starch-binding associating with outer membrane.
  
 
   0.756
SKC04862.1
SusD family protein.
  
 
   0.715
SKB77449.1
Starch-binding associating with outer membrane.
  
 
   0.703
SKB70457.1
SusD family protein.
  
 
   0.696
SKB85222.1
Starch-binding associating with outer membrane.
  
 
   0.696
SKB91356.1
Starch-binding associating with outer membrane.
  
 
   0.696
SKB79107.1
Starch-binding associating with outer membrane.
  
 
   0.691
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.