STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB87492.1L-proline dehydrogenase. (312 aa)    
Predicted Functional Partners:
SKB46556.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.911
SKC13515.1
5-oxoprolinase (ATP-hydrolysing).
    
  0.794
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.781
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.751
SKB56270.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.710
SKC11284.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.710
SKC20113.1
Ferredoxin-NADP reductase.
    
 0.710
SKB49193.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
  
  
 0.669
SKC09841.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
  0.648
SKC09845.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.634
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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