STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB92584.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (260 aa)    
Predicted Functional Partners:
SKB92227.1
L-selenocysteine selenide-lyase (L-alanine-forming); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.804
SKB99972.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.804
SKB92578.1
L-lactate dehydrogenase complex protein LldE.
       0.789
SKB72363.1
4-alpha-glucanotransferase/malto- oligosyltrehalose synthase,TIGR02401.
    
 0.681
SKB92589.1
L-rhamnose mutarotase.
       0.664
SKB92592.1
L-fuconolactonase.
       0.664
SKB92600.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.664
SKB72315.1
Maltokinase.
  
 
  0.567
SKB84878.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
    0.556
SKB92605.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.550
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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