STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC00900.1Peptidase family M23. (645 aa)    
Predicted Functional Partners:
SKC00932.1
Peroxiredoxin Q/BCP.
       0.820
SKC00892.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.659
SKC19378.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.652
SKC00939.1
Transketolase.
       0.592
SKC00946.1
Transketolase.
       0.584
SKC13008.1
Hypothetical protein.
  
    0.584
SKC00879.1
Cell wall-associated hydrolase, NlpC family.
 
  
 0.560
SKB54158.1
LysM repeat-containing protein.
 
 0.544
SKB75551.1
Hypothetical protein.
  
     0.543
SKB43740.1
Putative porin.
  
     0.524
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.