Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC04215.1 | SKC04239.1 | SAMN05660293_03751 | SAMN05660293_03753 | Threonine-phosphate decarboxylase. | Predicted ATPase. | 0.526 |
SKC04215.1 | SKC04256.1 | SAMN05660293_03751 | SAMN05660293_03754 | Threonine-phosphate decarboxylase. | Iron complex transport system substrate-binding protein. | 0.555 |
SKC04215.1 | SKC04267.1 | SAMN05660293_03751 | SAMN05660293_03755 | Threonine-phosphate decarboxylase. | ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. | 0.656 |
SKC04215.1 | SKC04276.1 | SAMN05660293_03751 | SAMN05660293_03756 | Threonine-phosphate decarboxylase. | Adenosylcobinamide kinase. | 0.862 |
SKC04215.1 | SKC04374.1 | SAMN05660293_03751 | SAMN05660293_03759 | Threonine-phosphate decarboxylase. | Alpha-ribazole phosphatase. | 0.637 |
SKC04215.1 | cbiA | SAMN05660293_03751 | SAMN05660293_03747 | Threonine-phosphate decarboxylase. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.994 |
SKC04215.1 | cobD | SAMN05660293_03751 | SAMN05660293_03752 | Threonine-phosphate decarboxylase. | Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.986 |
SKC04215.1 | cobQ | SAMN05660293_03751 | SAMN05660293_03750 | Threonine-phosphate decarboxylase. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.996 |
SKC04215.1 | cobS | SAMN05660293_03751 | SAMN05660293_03758 | Threonine-phosphate decarboxylase. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.867 |
SKC04215.1 | cobT | SAMN05660293_03751 | SAMN05660293_03757 | Threonine-phosphate decarboxylase. | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.904 |
SKC04239.1 | SKC04215.1 | SAMN05660293_03753 | SAMN05660293_03751 | Predicted ATPase. | Threonine-phosphate decarboxylase. | 0.526 |
SKC04239.1 | SKC04256.1 | SAMN05660293_03753 | SAMN05660293_03754 | Predicted ATPase. | Iron complex transport system substrate-binding protein. | 0.741 |
SKC04239.1 | SKC04267.1 | SAMN05660293_03753 | SAMN05660293_03755 | Predicted ATPase. | ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. | 0.668 |
SKC04239.1 | SKC04276.1 | SAMN05660293_03753 | SAMN05660293_03756 | Predicted ATPase. | Adenosylcobinamide kinase. | 0.712 |
SKC04239.1 | SKC04374.1 | SAMN05660293_03753 | SAMN05660293_03759 | Predicted ATPase. | Alpha-ribazole phosphatase. | 0.668 |
SKC04239.1 | cbiA | SAMN05660293_03753 | SAMN05660293_03747 | Predicted ATPase. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.524 |
SKC04239.1 | cobD | SAMN05660293_03753 | SAMN05660293_03752 | Predicted ATPase. | Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.563 |
SKC04239.1 | cobQ | SAMN05660293_03753 | SAMN05660293_03750 | Predicted ATPase. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.616 |
SKC04239.1 | cobS | SAMN05660293_03753 | SAMN05660293_03758 | Predicted ATPase. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.668 |
SKC04239.1 | cobT | SAMN05660293_03753 | SAMN05660293_03757 | Predicted ATPase. | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.668 |
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