STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC04605.1RNA polymerase sigma-70 factor, ECF subfamily. (193 aa)    
Predicted Functional Partners:
SKC04633.1
FecR family protein.
 
   0.838
SKC13390.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.693
SKB99345.1
FecR family protein.
  
   0.680
SKB95528.1
FecR family protein.
  
   0.664
SKB49026.1
FecR family protein.
  
   0.654
SKB81024.1
FecR family protein.
  
   0.653
SKB60869.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.640
SKB58144.1
FecR family protein.
  
   0.638
SKB46949.1
FecR family protein.
  
   0.633
SKC09732.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.630
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.