STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC05769.1Tetratricopeptide repeat-containing protein. (398 aa)    
Predicted Functional Partners:
SKB76818.1
CheB methylesterase.
    
 0.936
SKB83447.1
Signal transduction histidine kinase.
  
 
 0.930
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.927
SKC06337.1
Signal transduction histidine kinase.
    
 0.925
SKB72525.1
PAS domain S-box-containing protein.
 
  
 0.854
SKC18027.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.846
SKC19905.1
CheB methylesterase.
    
 0.838
SKB84350.1
Tfp pilus assembly protein PilF.
 
 
 0.800
SKB83760.1
Adenylate cyclase, class 3.
    
  0.798
SKC05780.1
23S rRNA (cytosine1962-C5)-methyltransferase.
       0.790
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.