STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC10297.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (310 aa)    
Predicted Functional Partners:
SKC17266.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.998
SKC17268.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.997
SKB72651.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 0.996
SKB72643.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
 0.995
SKB46548.1
STAS domain-containing protein.
 
  0.935
SKB72593.1
Anti-sigma B factor antagonist.
  
  0.926
SKC05531.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  0.926
SKC05561.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
  0.926
SKB43833.1
Chemotaxis protein MotB.
 
 
   0.896
SKC10303.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.730
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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