STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC13400.1Hypothetical protein. (751 aa)    
Predicted Functional Partners:
SKC13395.1
rfaE bifunctional protein, domain I.
 
     0.840
SKC13405.1
Predicted neuraminidase (sialidase).
 
     0.839
SKC13411.1
Protein of unknown function.
 
     0.838
SKC13408.1
Hypothetical protein.
 
    
0.806
SKB98088.1
Hypothetical protein.
  
     0.757
SKB84536.1
Uncharacterized membrane protein.
  
     0.740
SKC14867.1
Hypothetical protein.
  
     0.738
SKB84548.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.725
SKC00771.1
Hypothetical protein.
  
     0.724
SKB74557.1
Tat (twin-arginine translocation) pathway signal sequence; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.701
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.