STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC13843.1LytTr DNA-binding domain-containing protein. (124 aa)    
Predicted Functional Partners:
SKC18232.1
GAF domain-containing protein.
 
 
  0.596
SKC17999.1
Putative regulator of cell autolysis.
 
 
  0.582
SKC13847.1
Histidine kinase.
  
  0.546
SKC13851.1
Histidine kinase.
  
  0.546
SKC18237.1
Two component regulator propeller.
  
 
  0.527
SKC06337.1
Signal transduction histidine kinase.
    
 0.512
SKC13837.1
Hypothetical protein.
       0.500
SKB83447.1
Signal transduction histidine kinase.
    
 0.451
SKB81965.1
Signal transduction histidine kinase.
    
  0.436
SKC05015.1
Signal transduction histidine kinase.
    
  0.436
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.