STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC18497.1Uncharacterized membrane protein. (243 aa)    
Predicted Functional Partners:
SKC18504.1
tRNA pseudouridine65 synthase.
       0.688
SKC18501.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
       0.664
SKB83781.1
Cyclic nucleotide-binding domain-containing protein.
  
     0.500
SKB60581.1
Hypothetical protein.
  
     0.488
SKB82701.1
Sugar phosphate isomerase/epimerase.
  
     0.485
SKC18493.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
       0.467
SKB94081.1
PKD domain-containing protein.
  
     0.439
SKB47546.1
FHA domain-containing protein.
  
     0.419
SKC19414.1
Hypothetical protein.
  
     0.411
SKB48145.1
Hypothetical glycosyl hydrolase 6.
  
     0.409
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.