STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC18993.1Polysaccharide lyase. (285 aa)    
Predicted Functional Partners:
SKC18996.1
UDP-N-acetylglucosamine transferase subunit ALG13.
       0.538
SKC18998.1
Oligosaccharide biosynthesis protein Alg14 like.
       0.538
SKC13349.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.509
SKB87468.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.501
SKB47379.1
PKD domain-containing protein.
   
  0.470
SKC07206.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
  0.426
SKB94524.1
Protein of unknown function.
  
     0.425
SKB48709.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
   
  0.423
SKB59012.1
HmuY protein.
   
  0.423
SKB59285.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
  0.423
Your Current Organism:
Dyadobacter psychrophilus
NCBI taxonomy Id: 651661
Other names: CGMCC 1.8951, D. psychrophilus, DSM 22270, Dyadobacter psychrophilus Zhang et al. 2010, Dyadobacter sp. BZ26, strain BZ26
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.