STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX93623.1Hypothetical protein. (447 aa)    
Predicted Functional Partners:
SDX93516.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
 
 
 
 0.999
SDX93542.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1.
 
 
 
 0.998
SDX93573.1
Quinol:cytochrome c oxidoreductase membrane protein.
 
 
 0.998
SDX93597.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
 
 0.997
tsf
Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
   
 0.988
SDX93487.1
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit.
 
 
 
 0.977
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 0.968
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
 0.968
rpmF
Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 0.967
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.964
Your Current Organism:
Hymenobacter psychrophilus
NCBI taxonomy Id: 651662
Other names: CGMCC 1.8975, DSM 22290, H. psychrophilus, Hymenobacter psychrophilus Zhang et al. 2011, Hymenobacter sp. BZ33r, LMG 25548, LMG:25548, strain BZ33r
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.