STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR81038.1Type IV pilus assembly protein PilC. (402 aa)    
Predicted Functional Partners:
SDR81002.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.979
SDS40681.1
Type II secretion system protein E (GspE).
 
 
 0.973
gspE
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.973
SDT52834.1
General secretion pathway protein E.
 
 
 0.971
SDT62950.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.913
SDT62914.1
Type IV pilus assembly protein PilM.
 
 
 
 0.910
SDS40431.1
General secretion pathway protein G.
 
  
 0.887
SDR81063.1
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
   
 0.828
SDT51164.1
Twitching motility protein PilT.
 
  
 0.828
SDT62940.1
Type IV pilus assembly protein PilO.
 
 
 
 0.827
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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