STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR89467.1Motility quorum-sensing regulator / GCU-specific mRNA interferase toxin. (103 aa)    
Predicted Functional Partners:
SDR89441.1
HTH-type transcriptional regulator / antitoxin MqsA.
 
 
 0.999
SDT48799.1
Putative transcriptional regulator.
  
 
 0.955
SDR89533.1
MFS transporter, CP family, cyanate transporter.
       0.514
SDT30027.1
Leucine Rich Repeat.
  
     0.476
SDT65209.1
Protein of unknown function.
  
     0.475
SDS57945.1
Hypothetical protein.
  
     0.471
SDR96891.1
DNA-damage-inducible protein J.
  
  
 0.457
SDT64012.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.453
SDT49513.1
TraX protein.
  
     0.452
SDS06526.1
BrnA antitoxin of type II toxin-antitoxin system.
  
     0.439
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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