STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR93030.1C-terminal novel E3 ligase, LRR-interacting. (1603 aa)    
Predicted Functional Partners:
SDS25201.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.763
SDS05654.1
Protein of unknown function.
  
     0.756
SDT64049.1
HDOD domain-containing protein.
  
     0.753
SDS73068.1
UvrD/REP helicase N-terminal domain-containing protein.
  
     0.749
SDT65648.1
Hypothetical protein.
  
     0.742
SDS45290.1
Hypothetical protein.
 
  
 0.736
SDT65629.1
Hypothetical protein.
  
    0.733
SDT44740.1
Hypothetical protein.
  
     0.724
SDT24325.1
Conserved hypothetical protein.
  
     0.720
SDT65641.1
Hypothetical protein.
  
     0.707
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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