STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR97945.1Conserved hypothetical protein. (425 aa)    
Predicted Functional Partners:
SDR97917.1
Hypothetical protein.
       0.755
SDT63607.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
    0.616
SDR98004.1
Hypothetical protein.
 
     0.593
SDT35118.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
    0.590
SDT66178.1
Uncharacterized conserved protein YbgA, DUF1722 family.
  
    0.589
SDR97875.1
DNA-binding transcriptional regulator YbjK.
       0.544
SDR98042.1
Hypothetical protein.
       0.543
SDT63599.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
    0.505
SDT63772.1
Hypothetical protein.
   
    0.505
SDT34996.1
Hypothetical protein.
  
     0.499
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.