Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS09686.1 | SDS09790.1 | SAMN04490182_0726 | SAMN04490182_0728 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.536 |
SDS09686.1 | rnd | SAMN04490182_0726 | SAMN04490182_0727 | Methyltransferase domain-containing protein. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.536 |
SDS09790.1 | SDS09686.1 | SAMN04490182_0728 | SAMN04490182_0726 | Hypothetical protein. | Methyltransferase domain-containing protein. | 0.536 |
SDS09790.1 | SDS09816.1 | SAMN04490182_0728 | SAMN04490182_0729 | Hypothetical protein. | Phosphoglycerate dehydrogenase. | 0.557 |
SDS09790.1 | SDS13372.1 | SAMN04490182_0728 | SAMN04490182_0812 | Hypothetical protein. | Hypothetical protein. | 0.506 |
SDS09790.1 | SDS49797.1 | SAMN04490182_0728 | SAMN04490182_1677 | Hypothetical protein. | Hypothetical protein. | 0.505 |
SDS09790.1 | SDT53948.1 | SAMN04490182_0728 | SAMN04490182_5283 | Hypothetical protein. | Hypothetical protein. | 0.520 |
SDS09790.1 | cmoM | SAMN04490182_0728 | SAMN04490182_6169 | Hypothetical protein. | S-adenosylmethionine-dependent methyltransferase; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. | 0.500 |
SDS09790.1 | hflD | SAMN04490182_0728 | SAMN04490182_2904 | Hypothetical protein. | High frequency lysogenization protein. | 0.736 |
SDS09790.1 | rnd | SAMN04490182_0728 | SAMN04490182_0727 | Hypothetical protein. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.907 |
SDS09790.1 | rnt | SAMN04490182_0728 | SAMN04490182_0381 | Hypothetical protein. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.536 |
SDS09790.1 | zipA | SAMN04490182_0728 | SAMN04490182_3827 | Hypothetical protein. | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.496 |
SDS09816.1 | SDS09790.1 | SAMN04490182_0729 | SAMN04490182_0728 | Phosphoglycerate dehydrogenase. | Hypothetical protein. | 0.557 |
SDS09816.1 | rnd | SAMN04490182_0729 | SAMN04490182_0727 | Phosphoglycerate dehydrogenase. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.560 |
SDS13372.1 | SDS09790.1 | SAMN04490182_0812 | SAMN04490182_0728 | Hypothetical protein. | Hypothetical protein. | 0.506 |
SDS13372.1 | hflD | SAMN04490182_0812 | SAMN04490182_2904 | Hypothetical protein. | High frequency lysogenization protein. | 0.475 |
SDS49797.1 | SDS09790.1 | SAMN04490182_1677 | SAMN04490182_0728 | Hypothetical protein. | Hypothetical protein. | 0.505 |
SDS49797.1 | zipA | SAMN04490182_1677 | SAMN04490182_3827 | Hypothetical protein. | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.580 |
SDT53948.1 | SDS09790.1 | SAMN04490182_5283 | SAMN04490182_0728 | Hypothetical protein. | Hypothetical protein. | 0.520 |
SDT53948.1 | hflD | SAMN04490182_5283 | SAMN04490182_2904 | Hypothetical protein. | High frequency lysogenization protein. | 0.601 |
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