Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS11784.1 | SDT05554.1 | SAMN04490182_0775 | SAMN04490182_3152 | SWIM zinc finger. | DnaJ central domain-containing protein. | 0.842 |
SDS11784.1 | SDT44440.1 | SAMN04490182_0775 | SAMN04490182_4674 | SWIM zinc finger. | Acetoin utilization deacetylase AcuC. | 0.835 |
SDS11784.1 | SDT47533.1 | SAMN04490182_0775 | SAMN04490182_4843 | SWIM zinc finger. | DNA-directed RNA polymerase subunit beta. | 0.980 |
SDS11784.1 | SDT48654.1 | SAMN04490182_0775 | SAMN04490182_4922 | SWIM zinc finger. | Lysine 2-monooxygenase. | 0.913 |
SDS11784.1 | SDT57104.1 | SAMN04490182_0775 | SAMN04490182_5489 | SWIM zinc finger. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.967 |
SDS11784.1 | polA | SAMN04490182_0775 | SAMN04490182_5572 | SWIM zinc finger. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.976 |
SDS11784.1 | recA | SAMN04490182_0775 | SAMN04490182_0405 | SWIM zinc finger. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.928 |
SDS11784.1 | rpoA | SAMN04490182_0775 | SAMN04490182_4809 | SWIM zinc finger. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
SDS11784.1 | rpoC | SAMN04490182_0775 | SAMN04490182_4842 | SWIM zinc finger. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
SDS11784.1 | rpoZ | SAMN04490182_0775 | SAMN04490182_5329 | SWIM zinc finger. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.981 |
SDT05554.1 | SDS11784.1 | SAMN04490182_3152 | SAMN04490182_0775 | DnaJ central domain-containing protein. | SWIM zinc finger. | 0.842 |
SDT05554.1 | SDT44440.1 | SAMN04490182_3152 | SAMN04490182_4674 | DnaJ central domain-containing protein. | Acetoin utilization deacetylase AcuC. | 0.775 |
SDT05554.1 | SDT47533.1 | SAMN04490182_3152 | SAMN04490182_4843 | DnaJ central domain-containing protein. | DNA-directed RNA polymerase subunit beta. | 0.807 |
SDT05554.1 | SDT48654.1 | SAMN04490182_3152 | SAMN04490182_4922 | DnaJ central domain-containing protein. | Lysine 2-monooxygenase. | 0.606 |
SDT05554.1 | SDT57104.1 | SAMN04490182_3152 | SAMN04490182_5489 | DnaJ central domain-containing protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.520 |
SDT05554.1 | polA | SAMN04490182_3152 | SAMN04490182_5572 | DnaJ central domain-containing protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.776 |
SDT05554.1 | recA | SAMN04490182_3152 | SAMN04490182_0405 | DnaJ central domain-containing protein. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.854 |
SDT05554.1 | rpoA | SAMN04490182_3152 | SAMN04490182_4809 | DnaJ central domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.516 |
SDT05554.1 | rpoC | SAMN04490182_3152 | SAMN04490182_4842 | DnaJ central domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.539 |
SDT44440.1 | SDS11784.1 | SAMN04490182_4674 | SAMN04490182_0775 | Acetoin utilization deacetylase AcuC. | SWIM zinc finger. | 0.835 |
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