STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS20722.1Metallo-peptidase family M12B Reprolysin-like. (498 aa)    
Predicted Functional Partners:
SDS72657.1
Protease inhibitor Inh.
  
 
 0.946
SDS66234.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
 
   0.788
SDS72591.1
Membrane fusion protein, protease secretion system.
 
  
 0.722
SDT61893.1
Protein of unknown function.
 
 0.692
SDS72628.1
ATP-binding cassette, subfamily C, exporter for protease/lipase.
  
   
 0.684
SDT36501.1
Outer membrane autotransporter barrel domain-containing protein.
 
 
 0.672
SDS67138.1
Hypothetical protein.
   
   0.667
SDS38210.1
Iron complex outermembrane recepter protein.
  
 
 
 0.661
SDT23804.1
Protein of unknown function.
  
 0.648
SDT41740.1
Hypothetical protein.
  
 0.648
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.