STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS22178.1Uncharacterized membrane protein. (245 aa)    
Predicted Functional Partners:
SDR86023.1
Protein of unknown function.
  
     0.598
SDT38533.1
Protein of unknown function.
  
     0.578
brnQ
Branched-chain amino acid:cation transporter, LIVCS family; Component of the transport system for branched-chain amino acids.
       0.519
SDR86076.1
Protein of unknown function.
  
     0.512
SDT38512.1
Protein of unknown function.
  
     0.508
SDS85726.1
Hypothetical protein.
  
     0.454
SDS11461.1
Hypothetical protein.
  
     0.453
SDS23082.1
Protein of unknown function.
  
     0.429
SDS85763.1
Uncharacterized protein.
  
     0.403
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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