STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS33448.1Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family. (61 aa)    
Predicted Functional Partners:
SDS33534.1
Predicted nuclease of the RNAse H fold, HicB family.
 
 
 
 0.983
SDS06245.1
Predicted nuclease of the RNAse H fold, HicB family.
 
 
 
 0.961
SDS20683.1
Predicted nuclease of the RNAse H fold, HicB family.
 
 
 
 0.959
SDT44163.1
Protein of unknown function.
   
 
 0.835
SDS33574.1
Peptidylprolyl isomerase.
       0.507
SDS33633.1
Acetyltransferase (GNAT) family protein.
       0.491
SDS66188.1
Protein of unknown function.
  
     0.462
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.