STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS44461.1O-Antigen ligase. (440 aa)    
Predicted Functional Partners:
SDS44575.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
 
     0.878
SDS44401.1
Glycosyl transferases group 1.
 
     0.877
SDS44536.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.849
SDS44357.1
Maltose O-acetyltransferase.
 
     0.822
SDS44316.1
Membrane protein involved in the export of O-antigen and teichoic acid.
       0.791
SDS44276.1
UDPglucose 6-dehydrogenase.
       0.772
SDS44622.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.731
SDS44753.1
Colanic acid biosynthesis glycosyl transferase WcaI.
 
     0.696
SDS06100.1
Putative membrane protein.
  
     0.596
SDS44223.1
Tyrosine-protein kinase Etk/Wzc.
       0.584
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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