STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS47199.1Protein of unknown function. (145 aa)    
Predicted Functional Partners:
SDT60369.1
Glycosyl hydrolases related to GH101 family, GHL1-GHL3.
  
     0.655
SDT30027.1
Leucine Rich Repeat.
  
     0.571
SDT59381.1
Biofilm PGA synthesis protein PgaA.
  
     0.558
SDS47162.1
Protein of unknown function.
       0.553
SDS41171.1
Hypothetical protein.
  
     0.550
SDS48420.1
Acetyltransferase (GNAT) family protein.
  
     0.519
SDT60607.1
Leucine rich repeat-containing protein.
  
     0.505
SDS04475.1
Polysaccharide deacetylase.
  
     0.490
SDS25201.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.488
SDS87123.1
Type VI secretion system protein VasJ.
  
     0.483
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.