STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS48665.12,4-dienoyl-CoA reductase. (410 aa)    
Predicted Functional Partners:
SDT62996.1
Glutamate synthase (NADPH) large subunit.
    
 0.792
SDT28212.1
Electron transfer flavoprotein beta subunit.
  
 
 0.683
SDT49603.1
Electron transfer flavoprotein beta subunit.
  
 
 0.683
SDS89471.1
Respiratory nitrate reductase beta subunit.
    
   0.668
SDT34491.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.660
SDT28187.1
Electron transfer flavoprotein alpha subunit apoprotein.
   
 
 0.597
SDT49619.1
Electron transfer flavoprotein alpha subunit apoprotein.
   
 
 0.597
SDS48703.1
DNA-binding transcriptional regulator, MerR family.
  
    0.569
SDS48621.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
       0.558
SDS90697.1
Cytochrome C oxidase, cbb3-type, subunit III.
    
  0.555
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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