STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS51387.1Sugar phosphate isomerase/epimerase. (260 aa)    
Predicted Functional Partners:
SDS51313.1
Dehydrogluconokinase.
 
 0.985
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
  
 
 0.922
SDS51215.1
Phosphogluconate 2-dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
  0.853
SDS51271.1
Sugar phosphate permease.
 
  
 0.785
SDS51467.1
Transcriptional regulator, LacI family.
 
  
 0.778
iolB
5-deoxy-glucuronate isomerase.
  
  
 0.777
iolC
5-dehydro-2-deoxygluconokinase.
  
 
 0.774
SDS14601.1
Chorismate mutase.
     
 0.754
SDR81603.1
PTS system, fructose-specific IIC component.
  
 
 0.723
SDS15231.1
Predicted dehydrogenase.
  
 
 0.660
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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