STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS54847.1FecR family protein. (302 aa)    
Predicted Functional Partners:
SDS54805.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.965
SDS24652.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.863
SDS42983.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.857
SDT43315.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.857
SDR90870.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.854
SDS81088.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.854
SDT49180.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.854
SDT56976.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.853
SDS24720.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.849
SDS92306.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.849
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.