STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS72591.1Membrane fusion protein, protease secretion system. (437 aa)    
Predicted Functional Partners:
SDS72554.1
Outer membrane protein, protease secretion system.
 
 0.984
SDS72628.1
ATP-binding cassette, subfamily C, exporter for protease/lipase.
  
 0.964
SDS72697.1
Serralysin.
 
  
 0.856
SDT63894.1
Outer membrane protein.
 
 0.851
macB
Macrolide transport system ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.799
SDS54063.1
Serralysin.
 
  
 0.736
SDS20722.1
Metallo-peptidase family M12B Reprolysin-like.
 
  
 0.722
SDS72657.1
Protease inhibitor Inh.
  
  
 0.684
SDT63615.1
Serralysin.
 
  
 0.683
SDT59099.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.664
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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