STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS78889.1Amino acid ABC transporter membrane protein 1, PAAT family. (229 aa)    
Predicted Functional Partners:
SDS78951.1
Histidine transport system permease protein.
 
 
0.969
SDS01642.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
 
 0.968
SDS01818.1
Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.
 
 0.959
SDS78854.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 0.957
SDR87612.1
Lysine/arginine/ornithine transport system substrate-binding protein.
 
 0.907
SDT30070.1
L-arginine ABC transporter ATP-binding protein.
 
 
 0.895
SDT61663.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
 
 0.894
SDS01727.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 
0.867
SDT30166.1
Arginine/ornithine transport system substrate-binding protein.
 0.864
SDT60536.1
Cystine transport system substrate-binding protein.
 0.860
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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