STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS79570.1D-amino-acid dehydrogenase. (410 aa)    
Predicted Functional Partners:
SDS79497.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.967
SDT49447.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.967
SDS79537.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.960
SDS83548.1
Proline racemase.
 
  
 0.894
SDT03573.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.867
SDT49464.1
Sarcosine oxidase subunit delta.
  
 0.797
SDT62996.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.792
SDS42836.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.777
SDS36696.1
N-methylglutamate dehydrogenase subunit C.
  
 0.760
SDT07642.1
Sarcosine oxidase subunit alpha.
  
 0.760
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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