STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS84750.1Transcriptional regulator, GntR family. (233 aa)    
Predicted Functional Partners:
SDS84789.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.937
SDT26166.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.813
SDT58953.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.761
SDT01966.1
DNA-binding transcriptional regulator, FadR family.
  
     0.759
SDS76735.1
Transcriptional regulator, GntR family.
  
  
 0.750
SDS83508.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.745
SDS16288.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.676
SDS84711.1
Aerobic C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
    0.633
SDT26034.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.616
SDS76694.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.554
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.