STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS89693.1Predicted lipid carrier protein YhbT, contains SCP2 domain. (155 aa)    
Predicted Functional Partners:
SDS89726.1
Collagenase-like protease, PrtC family.
 
  
 0.990
SDS89762.1
Putative protease.
 
  
 0.979
SDS89795.1
Molybdopterin molybdotransferase.
  
    0.786
SDS89832.1
Molybdenum cofactor biosynthesis protein B.
       0.786
SDS89947.1
Uncharacterized protein involved in response to NO.
 
     0.686
SDS29524.1
Putative protease.
 
  
 0.596
SDS89882.1
Pyridoxamine 5'-phosphate oxidase.
       0.564
SDS71610.1
Putative protease.
 
  
 0.532
SDS47482.1
Acetyltransferase (GNAT) domain-containing protein.
  
  
 0.504
SDS89610.1
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX.
 
     0.498
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.